I got a
gff file from flybase that i am trying to use with
bedtools. However, it is throwing an error:
(0)> bedtools intersect -a my.vcf -b dmel-2L-r5.41.gff Error: Invalid record in file dmel-2L-r5.41.gff. Record is 2L FlyBase chromosome_band -204333 1326937 . + . ID=band-21_chromosome_band;Name=band-21
I downloaded the
gff from here
I don't know why this format would be incorrect. From what I know of
gff files, it seems correct.
Any help would be appreciated.