Help Creating a Sequin file from tbl2asn: Can't parse template file
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5.8 years ago

Hi, I am using tbl2asn to submit a genome with annotations. I have the .tbl, the .fsa fasta file, a .src, and a template.sbt that I produced from the NCBI website all in a folder.

I ran the following command:

tbl2asn -p . -t template.sbt

and it generates nothing. If I include an -o with an output file with .sqn, it generates a partial sequin file with only the sbt information, without the .tbl info.

Can anyone help? This process is so frustrating.

sequence genbank tbl2asn tbl sequin • 2.2k views
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Hope you are following the guidelines mentioned here :http://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/

I have used following command , which has worked successfully: tbl2asn -t *.sbt -p [directory] -Y *.cmt -M t -j "[organism=XXXX] [tissue=XXX] [tech=xxx] [moltype=XXX]

Note: moltype = mRNA , technique , tech=WGS/Transcriptome

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I have the same error

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