Question: A rational way for selecting the number of DEG with significant p-value for GSEA
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gravatar for Shamim Sarhadi
3.0 years ago by
IRAN
Shamim Sarhadi210 wrote:

suppose I have 1000 prob-id(output of the limma) with the significant p-value, should all of them be select for GSEA, or there is a rational way of choosing the number of DEG for GSEA?

gsea deg • 815 views
ADD COMMENTlink modified 3.0 years ago by b.nota6.3k • written 3.0 years ago by Shamim Sarhadi210
0
gravatar for b.nota
3.0 years ago by
b.nota6.3k
Netherlands
b.nota6.3k wrote:

Give it a try and see if it makes sense. If not, you can also try up and down regulated genes separately.

ADD COMMENTlink written 3.0 years ago by b.nota6.3k

something like trial and error approach !!! thank you b.nota

ADD REPLYlink written 3.0 years ago by Shamim Sarhadi210
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