heatmap in R software or any software
6
1
Entering edit mode
8.7 years ago
pjalali46 ▴ 10

My data includes:

enc = (53.89,54.87,42.61,48.34,46.93,49.53,47.04,51.97,51.23,52.06)
GC3 = (40.7, 55.8, 35, 31.1, 75.2,  36.4, 36.3,66.9, 31.2, 41.3)

I need to have a heatmap.

Software R version 3.1.1

heatmap • 2.5k views
ADD COMMENT
2
Entering edit mode
8.7 years ago

The matrix2png web or command-line tool is a very simple option and doesn't require as much data munging as R options, IME.

ADD COMMENT
2
Entering edit mode
8.7 years ago
willgilks ▴ 360

Try:

enc = c(53.89,54.87,42.61,48.34,46.93,49.53,47.04,51.97,51.23,52.06) 
GC3 = c(40.7, 55.8, 35, 31.1, 75.2, 36.4, 36.3,66.9, 31.2, 41.3)
image(cbind(enc, GC3)

Then customise the scales.

ADD COMMENT
1
Entering edit mode
8.7 years ago
se.raschka ▴ 150

Try heatmap.2 in the R gplots package.

Yeah, that would be the "simplest" solution for basic heatmaps I'd say. I've put up a tutorials a few years ago, hopefully it helps regarding the details: A short tutorial for decent heat maps in R

ADD COMMENT
0
Entering edit mode
8.7 years ago
mastal511 ★ 2.1k

Try heatmap.2 in the R gplots package.

ADD COMMENT
0
Entering edit mode
8.7 years ago
pjalali46 ▴ 10

dears this link is good: http://www.compbiome.com/2010/04/r-heatmaps-with-gplots.html

ADD COMMENT
0
Entering edit mode
8.7 years ago
a8802137 • 0

Genesis (http://genome.tugraz.at/genesisclient/genesisclient_description.shtml) is a free software.

ADD COMMENT

Login before adding your answer.

Traffic: 2357 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6