Tutorial:Various youtube tutorials, including using proteomicsdb, finding adaptors, etc.
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8.1 years ago
Jordan Anaya ★ 1.1k

I just wanted to let you guys know that I have some tutorials posted at www.omnesres.com and my youtube channel: https://www.youtube.com/channel/UCoE6RMWAq3aA7FdPY7zOEVQ

I have all the code for the tutorials in one GitHub repository for easy reference: https://github.com/OmnesRes/knick_knacks

A summary of what I have so far:

  • Making CDF plots with Python (code only)
  • Making Kaplan-Meier plots with Python
  • Finding adaptors de novo with Python for small RNA-SEQ data
  • Using the Proteomicsdb API with Python and identifying phosphorylated peptides
  • Parsing MAF files and finding the peptides which were altered, which is an exciting new area of immunotherapy
  • An explanation of PAR-CLIP data
  • Parsing Genbank full files
  • Efficiently writing files with Python

I don't post videos very often, but when I do record videos I record four to five at a time, so if there is something you would like to see let me know and I'll add it to my list.

RNA Python • 1.7k views
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8.1 years ago
misbah_pak10 ▴ 10

Please elaborate some tools for finding and designing promoters in plants genes.

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