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8.1 years ago
Please any body help me. I am interested in using Mothur for metagenomics analysis. I followed the Miseq SOP. But while running chimera.uchime command a warning is coming "Ignoring gaps in FASTA file", but there is no gaps in my fasta file. There should be 3 output files generated after running this command but i am getting only 2, .pick.count_table is not being generated.
Kindly help.
