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• Finding Transcriptional Factor Binding Motifs by Table Browser in UCSC
  I want to find how many motifs bind to the Transcription Factor of ANO1 gene. Would you please h...
• how to get the binding motif of splicing factor
  I want to ask if anywhere we can find the binding motif (consensus sequence) of splicing factor o...
• Finding motifs for TFs binding sites in my sequences
  Hello everyone, This is a variation of the typical question of "How can I find common motifs in ...
• How To Get Consensus Sequence From Motif Id (Or Name)?
  I have a long list of transcription factor binding motifs, for each motif I have the ID (in a for...
• blastn use help
  Hello! I want to perform a blast search of splicng factors binding motifs on certain hg19 sequen...
• Find The List Of Tf Likely To Bind To A Promoter Or A Genome Location
  Hello everybody, I have list of genomic positions (promoters) and I want to know what are the TFs...
• Presence of both forward and reverse motifs in transcription factor binding sites
  In many chip-seq transcription factor binding site locations, I found a presence of both the forw...
• DNA binding site motif database
  I have a list of unique kmers (5-mers in this case) that are essential to the pathway I'm researc...
• How do I perform a motif search on a specific fasta sequence?
  I have an annotated genome file, and I have a potential ncRNA that could be an eRNA. I have ext...
• How To Find A Certain Motif Pattern Among Sequences
  Hi, I've got a motif pattern, in matrix form. How can I identify if any of a number of sequences...
• Can one emphasize identity matches with MEME a la perc_identity with BLAST?
  I can't figure out how to get MEME to de-emphasize mismatches in the shared motifs that it finds....
• Looking For A General Purpose Motif Finder Software
  Hi! I'm looking for general purpose motif finder software, in the sense that I could input not al...
• RNA binding protein detection
  Hi, I downloaded binding motifs of multiple RBPs (RNA binding proteins) on CISBP-RNA and want t...
• Suboptimization in Developmental Enhancers. MOTIF variation
  Hello Everyone, I have a question and I hope some of you have some idea or possible solutions t...
• Number Of Transcription Factor Binding Sites In The Promoter Of A Gene
  Hi all, I am doing Motif discovery of a set of ChipSeq peaks using GADEM under R statistical sof...
• how to find motif by UCSC
  I have several transcript factor and want to exact their motif by UCSC. The result should have mo...