Entering edit mode
8.0 years ago
CathrineGr
•
0
Hi everyone! I need to check my transcriptome sequences through many online tools. But of course all they have a program input limit. I can download the results using wget or curl, but how I can paste partially my sequences in tool? Please, help me!!!
I use tools predicting antimicrobial features. Unfortunatelly, I absolutely don't know what Galaxy is.
What exactly do you mean by?
Are you referring to just pasting data into a tool input window? You will have to tell us what website/tool you are referring to.
Yes, I need to paste one sequence in input window, get a result and repeat it with others sequences from the file. I need to use www.camp.bicnirrh.res.in/predict/ The problem is how to load my sequence in a tool's window.
I want to analyse my data through tools http://www.camp.bicnirrh.res.in/predict/, http://bioinformatics.cs.ntou.edu.tw/ADAM/svm_tool.html and http://www.imtech.res.in/raghava/cellppd/submit_prot.php and I want to do it through my console, because I have approximately 100.000.000 sequences. For this, I plan get a little number of sequences from my fasta file, input it in tool window, get a result, save it and repeat the algorithm. Could somebody give me an advice how to do this?
No website is going to like you trying to run 100,000,000 sequences via the web front end (even if you can come up with some clever way of posting one sequence into the search window one at a time). You may need to run these tools locally.
Unfortunatelly, I couldn't run it locally