Where to find Bioinformatics datasets for the purpose of visualization
1
1
Entering edit mode
6.7 years ago
' ▴ 290

I am looking for a source to download datasets to practice visualization in R, mainly Arc Diagrams. Where can I find such datasets?

R • 1.5k views
ADD COMMENT
0
Entering edit mode

What kind of data are you interested in? There are MicroArray data, DNA-Seq data, transcriptomics, proteomics, population dynamics data and much much more.

Most data sets are in a raw format, from which you need to deduce your entities' relationships.

You can have e.g. a look at the kegg database to see enzymatic interactions.

ADD REPLY
1
Entering edit mode
6.7 years ago
michael.ante ★ 3.7k

Hi Lazarus,

you may have a look at EBI Expression atlas, or NCBI's Short read archive, or NCBI's Gene expression omnibus. These sides provide either MicroArray expression files or sequenced reads. You need to process them in order to compute gene-gene interactions.

Cheers,

Michael

ADD COMMENT

Login before adding your answer.

Traffic: 1965 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6