synonymous vs nonsynonymous substitutions , Ts/tv etc

Question

[holzdan]

Hey somebody knows a simple tool for windows to calculate standard statistics for a given alignment like synonymous/nonsynonymous substitutions , transversion / transition ratio etc.... ?

cheers

Answer 1

[dago]

You can try these

Paml: http://abacus.gene.ucl.ac.uk/software/paml.html

kaKs calculator: http://kakscalculator.fumba.me/