Question: Admixture cv = -nan
gravatar for jcolella.jc
4.2 years ago by
jcolella.jc0 wrote:

When I run the Admixture program against genomic SNP data from multiple samples some of the output cv values = "nan" or "-nan".

The manual does not explain this output - does anyone know whether this is a high or low cv value? Otherwise I cannot determine the best K value for my samples.

Anything helps!

ADD COMMENTlink written 4.2 years ago by jcolella.jc0

My guess would be that this looks like a divide by zero error -> infinity.

ADD REPLYlink written 4.2 years ago by WouterDeCoster44k
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