i am a newbie in RNA seq data analysis. I want to check a gene as DEG in a dataset of RNA-chip seq experiment. The data provided is in the form of a single column for each treatment type and lists the expression level of each gene normalized to transcripts per million (TPM).i need help on using what type of analysis using R to find out the DEGs.
The snapshot of data is like this.
Gene EntrezID Normal_TPM Diabetes_TPM
Apoa1 11806 14668.15 2875.06
Mup3 17842 9992.58 1697.63
Serpina3k 20714 8031.3 2849.67
Alb 11657 6801.26 6912.08
Cyp2e1 13106 6580.8 7816.79
Thanks in advance