Question: Output AO using bcftools
0
L. A. Liggett • 120 wrote:
I calling variants from sorted bam files using samtools mpileup
and then bcftools call -cv input > output.vcf
. But in the resulting variant file there is no data reported for alternate allele frequency or AO
. Is there a way to get bcftools to output AO
?
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modified 4.7 years ago
by
Jorge Amigo ♦ 12k
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written
4.7 years ago by
L. A. Liggett • 120