Average peak center of three peaks using pybedtools?
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8.0 years ago
Kevin_Smith ▴ 10

I have the data of three peaks in bed files, How I can find the average center across all three peaks using pybedtools? I will appreciate very much any help with a script.

Thanks in advance!

ChIP-Seq gene alignment sequence genome • 1.8k views
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What do you mean by average peak centre ? Use mergeBed to get the ends of merged coordinates and then get the center.

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What do you mean by "data of three peaks in bed files"? Do you mean you have three bed files, each of which contains many peaks?

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