Cuffnorm output files gives only geneid and not gene names in annotation
2
0
Entering edit mode
8.6 years ago
Yaseen Ladak ▴ 30

Hi All,

I need a little help, the output of cuffnorm from the genes.fpkm_table file is as follows:

tracking_id q1_0 q2_0 ECDH10B_0001 0 0 ECDH10B_0002 12.7841 26.1493 ECDH10B_0003 20.8691 21.9675 ECDH10B_0004 25.1604 47.0917

How can I include the gene name in the output file in addition to the gene id which is also present in the input GTF file that I am using from ensembl. I am not discovering any new novel transcripts.

Can any one please help.

Thank you Yaseen

RNA-Seq • 2.7k views
ADD COMMENT
0
Entering edit mode
8.6 years ago
fanli.gcb ▴ 730

Look at the genes.attr_table file

ADD COMMENT
0
Entering edit mode
8.6 years ago
Yaseen Ladak ▴ 30

Thanks but genes.attr_table does not give me the count. I want to have the counts with the gene id and gene names.

ADD COMMENT
0
Entering edit mode

Use the tracking_id to match them up....

ADD REPLY

Login before adding your answer.

Traffic: 1313 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6