Entering edit mode
8.0 years ago
aj123
▴
120
Hi all,
Im getting the following error when i run my rna-seq pipeline please help me figure out what it means:
samtools: bam_stat.c:83: bam_flagstat: Assertion `fp' failed. ./PM24_GTGGCC_L006_R1_001.fastq.sh: line 1: 370261 Aborted (core dumped) samtools flagstat accepted_hits.bam
What version of samtools are you using? It's likely that you either had a filesystem error or ran out of memory (due to something else).
Which pipeline are you trying? Please provide more details.
it sppears to be working okay now with more space.