Question: Mapping Y Chromosome Mutation Names And Dbsnp Ids
gravatar for Yuri
8.4 years ago by
Bethesda, MD
Yuri1.5k wrote:

How to find corresponding dbSNP IDs (if exist, of course) for Y chromosome mutations summarized, for example, by The Y Chromosome Consortium here? (Or do you know a better list of mutations?) They can be used for haplogroups determination.

I found a table in supplemental data of a recent article:

Y-chromosome haplogroup diversity in the sub-Himalayan Terai and Duars populations of East India.

Is there a more complete/up-to-date table? Any database with such mapping?

mutation snp • 2.4k views
ADD COMMENTlink written 8.4 years ago by Yuri1.5k
gravatar for Peixe
8.3 years ago by
Peixe600 wrote:

Hi Yuri,

Just check this page. It'ś a curated site from the International Society for Genetic Genealogy, and in that link you can find a table with the name of the SNP, it's Haplogroup, some other names, the RefSNP-ID (what I figure you are looking for) and in case there's not rs# (sometimes there isn't because of a lack of human work...), you have the Y-position for different assemblies, so you can find the sequences adscribed, and the base substitution.

I encourage you to give a look to the whole web site, if you're involved inworking with Y-Chrom markers. It's a site full of resources.

Hope it could help.


ADD COMMENTlink written 8.3 years ago by Peixe600

Thanks a lot, very useful!

ADD REPLYlink written 8.3 years ago by Yuri1.5k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1819 users visited in the last hour