Tool: BPGA - Bacterial Pan Genome Analysis pipeline
gravatar for bpgatool
3.4 years ago by
bpgatool80 wrote:

BPGA is a fast pan-genome analysis tool for microbial genomes. Along with regular pan genome profiles, BPGA also provides detailed statistics and sequences with their downstream analysis like KEGG/COG assignments and phylogeny based on core, MLST as well as pan genome. In addition, it also studies genes with extreme/atypical GC contents as that of the genomic GC content, sub-grouping of large datasets etc..

BPGA Sourceforge Page.
BPGA HomePage.

It was recently published in Scientific Reports.

Any suggestions for further improving the tool are welcome.

ADD COMMENTlink modified 15 months ago by Dattatray Mongad320 • written 3.4 years ago by bpgatool80
gravatar for ambrinaakbar
22 months ago by
ambrinaakbar10 wrote:

Hi, would this software helpful to find out variants in whole MLST database?

ADD COMMENTlink written 22 months ago by ambrinaakbar10
gravatar for Dattatray Mongad
15 months ago by
National Centre for Cell Science, Pune
Dattatray Mongad320 wrote:

How can I update COG and KEGG data for using it with BPGA?

ADD COMMENTlink written 15 months ago by Dattatray Mongad320

COG is 2003 database with update on 2014. As of my knowledge it has not been updated since. So BPGA uses this only. You can use KAAS to re-annotate the fasta file.

ADD REPLYlink written 14 months ago by Nari870
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