Tool: BPGA - Bacterial Pan Genome Analysis pipeline
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gravatar for bpgatool
4.7 years ago by
bpgatool80
India
bpgatool80 wrote:

BPGA is a fast pan-genome analysis tool for microbial genomes. Along with regular pan genome profiles, BPGA also provides detailed statistics and sequences with their downstream analysis like KEGG/COG assignments and phylogeny based on core, MLST as well as pan genome. In addition, it also studies genes with extreme/atypical GC contents as that of the genomic GC content, sub-grouping of large datasets etc..

BPGA Sourceforge Page.
BPGA HomePage.

It was recently published in Scientific Reports.

Any suggestions for further improving the tool are welcome.

ADD COMMENTlink modified 2.7 years ago by Dattatray Mongad350 • written 4.7 years ago by bpgatool80

does it give us the name of all those genes which are core genes?

ADD REPLYlink written 12 months ago by nosheenqureshi19940
1
gravatar for ambrinaakbar
3.2 years ago by
ambrinaakbar10
ambrinaakbar10 wrote:

Hi, would this software helpful to find out variants in whole MLST database?

ADD COMMENTlink written 3.2 years ago by ambrinaakbar10
0
gravatar for Dattatray Mongad
2.7 years ago by
National Centre for Cell Science, Pune
Dattatray Mongad350 wrote:

How can I update COG and KEGG data for using it with BPGA?

ADD COMMENTlink written 2.7 years ago by Dattatray Mongad350
1

COG is 2003 database with update on 2014. As of my knowledge it has not been updated since. So BPGA uses this only. You can use KAAS to re-annotate the fasta file.

ADD REPLYlink written 2.6 years ago by Nari880
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