Tool: BPGA - Bacterial Pan Genome Analysis pipeline
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gravatar for bpgatool
2.9 years ago by
bpgatool80
India
bpgatool80 wrote:

BPGA is a fast pan-genome analysis tool for microbial genomes. Along with regular pan genome profiles, BPGA also provides detailed statistics and sequences with their downstream analysis like KEGG/COG assignments and phylogeny based on core, MLST as well as pan genome. In addition, it also studies genes with extreme/atypical GC contents as that of the genomic GC content, sub-grouping of large datasets etc..

BPGA Sourceforge Page.
BPGA HomePage.

It was recently published in Scientific Reports.

Any suggestions for further improving the tool are welcome.

ADD COMMENTlink modified 9 months ago by Dattatray Mongad260 • written 2.9 years ago by bpgatool80
1
gravatar for ambrinaakbar
16 months ago by
ambrinaakbar10
ambrinaakbar10 wrote:

Hi, would this software helpful to find out variants in whole MLST database?

ADD COMMENTlink written 16 months ago by ambrinaakbar10
0
gravatar for Dattatray Mongad
9 months ago by
National Centre for Cell Science, Pune
Dattatray Mongad260 wrote:

How can I update COG and KEGG data for using it with BPGA?

ADD COMMENTlink written 9 months ago by Dattatray Mongad260
1

COG is 2003 database with update on 2014. As of my knowledge it has not been updated since. So BPGA uses this only. You can use KAAS to re-annotate the fasta file.

ADD REPLYlink written 8 months ago by Nari870
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