Question: Perl module existing for local sequence alignment S-W
0
gravatar for stranistranic
4.6 years ago by
stranistranic0 wrote:

Hi,

I need existing module for local alignment - Smith Waterman algoritm. Such as for global alignment - Needleman Wunsch i use Algorithm::NeedlemanWunsch.

Does it exist S-W? I found just MILLER_MYERS... I need already done version for comparison.

I hope you can help me.Tnx

ADD COMMENTlink written 4.6 years ago by stranistranic0

Looked at this?

ADD REPLYlink written 4.6 years ago by genomax92k

At this link you can not changing the match, mismatch, or?

ADD REPLYlink written 4.6 years ago by stranistranic0

If you just need perl implementation (not specifically a module) of SW then do a google search. You will find multiple sources.

ADD REPLYlink written 4.6 years ago by genomax92k

I need some sort already done implementation with using a library. Because I compare already done solution with library and my solution without using library. So I decide and searching a module if exist.

ADD REPLYlink written 4.6 years ago by stranistranic0
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