Perl module existing for local sequence alignment S-W
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4.9 years ago

Hi,

I need existing module for local alignment - Smith Waterman algoritm. Such as for global alignment - Needleman Wunsch i use Algorithm::NeedlemanWunsch.

Does it exist S-W? I found just MILLER_MYERS... I need already done version for comparison.

I hope you can help me.Tnx

perl sequence alignment smith waterman module • 1.3k views
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Looked at this?

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At this link you can not changing the match, mismatch, or?

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If you just need perl implementation (not specifically a module) of SW then do a google search. You will find multiple sources.

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I need some sort already done implementation with using a library. Because I compare already done solution with library and my solution without using library. So I decide and searching a module if exist.

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