Question: Multiple segments of reference virus
0
gravatar for lxu2011ct
3.0 years ago by
lxu2011ct20
lxu2011ct20 wrote:

Hi, I'm new to Bowtie2 and want to generate the indexer with Bowtie2-Build from a multiple-segment reference virus. I downloaded it from NCBI as one fasta file with multiple sequences (segments) in the file. I want to know if Bowtie2-Build can run with one fasta file with multiple sequences. If not, I will break it into multiple fasta files with one sequence in each file, then feed them as comma-separated list of the fasta files. Thank you very much.

bowtie2-build bowtie2 • 743 views
ADD COMMENTlink modified 3.0 years ago by genomax67k • written 3.0 years ago by lxu2011ct20
1
gravatar for genomax
3.0 years ago by
genomax67k
United States
genomax67k wrote:

Yes it can and you should do it that way. File would have to be in multi-fasta format.

ADD COMMENTlink modified 3.0 years ago • written 3.0 years ago by genomax67k

Thank you very much.

ADD REPLYlink written 3.0 years ago by lxu2011ct20
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