Problem In running Modeller for Homology Modelling of Protein

Question

[Vinay Singh]

Hello Everyone,

I am Running Modeller for Homology Modelling of Protein but Getting error and not able to resolve the problem please help to sort out this error.

1. mod9.16 model_default.py                   
Could not find platform independent libraries <prefix>
Could not find platform dependent libraries <exec_prefix>
Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]
'import site' failed; use -v for traceback
FATAL ERROR: Cannot open file model_default.py: No such file or directory

But the model_default.py file is their in my system.

[GenoMax]

Have you tried to run your original command with -v option as the error suggests? Before you tackle the model_default.py problem there are (potentially) missing libraries to take care of first (which may be fixed by setting $PYTHON_HOME).

[Felix_Sim]

Is the model_default.py script in the same folder from which you invoke mod9.16? How did you install modeller?