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• Where to download fasta sequence of ribosomal RNAs for human build 37
  Hi I would like to download the following eukaryotic ribosomal RNAs to perform alignment of my ...
• Where to find canonical versions of 18S sequences?
  I'm doing an analysis of sequence features in 18S rRNA sequences. I have downloaded data from SIL...
• rRNA remove from RNAseq data
  Hi everyone, I mapped human RNAseq raw data to Refseq rRNA sequences using bwa, it turned out th...
• Could not find rRNA genes (28S, 18S, 5.8S and 5S) in human_genes.gtf file?
  Dear All,   I am searching for human 28S, 18S, 5.8S and 5S rRNA (RNA28S, RNA18S, RNA5-8S and RN...
• Does GRCh38 reference genome contain 18S and 28S rRNA sequences?
  Hi everybody, I'm using STAR to analyse RNA-seq data. I used GRCh38 as reference genome and also...
• 18S and 28S in hg19
  Hi all, I'm guessing this is something I should just know.  However, I'm helping QC some new ssR...
• HTseq-counts not counting correctly?
  Hello I am doing a DE analysis of Drosophila, after mapping my fasq file to Drosophila genome wi...
• database for mucor related diseases?
  I have a 18S rRNA of a uncultured Mucor, I want to find related diseases of the Mucor sequence in...
• What'S The Difference Between 18S Rrna And 18S Rdna?
  The 18S rRNA is frequently used in phylogeny (see http://en.wikipedia.org/wiki/18S_ribosomal_RNA)...
• RNA base modification
  Hello, Does anybody know if the transcribed spacers (external or internal) also get its base mod...
• rRNA in human
  I am working on human RNAseq data. I am trying to build rRNA database in order to remove the rRNA...
• Annotate multiple rRNAs with variable and constant regions
  Hello all, I was wondering what ways are there to annotate the multiple rRNA alignments with th...
• recommended eukaryote 18S database?
  Hey,   I'm interested in filtering out chimeric reads from 18S sequencing data using UCHIME (re...
• Download Rrna Sequences
  Hi, Simple question : Where can I download all rRNA sequences (from human or other species). I f...
• RNAmmer returns 8s_rRNA, which is what?
  I am using RNAmmer version 1.2, available after sign-up at http://www.cbs.dtu.dk/services/RNAmmer...
• Retrieving The Sequences Of The Human Snorna, Lncrna, Etc...
  Hi all, do you know a way to download the fasta sequences of all the non-'classical' Human RNA (...
• Principles and Workflow of 16S/18S/ITS Amplicon Sequencing
  This article shows what 16S/18S/ITS amplicon sequencing is and how it works. Let’s get ready to l...
• Rn28s1 28S ribosomal RNA [ Mus musculus] annotation in GTF file
  Hi, I looked at the GTF file M13 from the GENCODE (https://www.gencodegenes.org/mouse_releases/1...
• Where To Find Detailed Information On Genomic Location Of Rrna Genes?
  Hello, I'm trying to identify genomic locations of individual rRNA genes in mouse. It seems that...
• if i am right to remove the contamination?
  hello all,  my adviser asked me like this, i downloaded the fasta file containing rRNA-genes in...
• Unknown mapping difference from host removal
  Hi All,  I have done two viral runs on the same sample with a total of 490224 reads. Since these...