Memory and Runtime Cufflinks
0
1
Entering edit mode
5.1 years ago
debitboro ▴ 200

Hi Everyone,

I would like to run cufflinks on my generated .bam file from tophat2, but I don't know the amount of RAM to use, and the time that such program takes to finish. I have a .bam file of 4 giga.

Help/Advice ?

cufflinks runtime tophat2 • 1.8k views
ADD COMMENT
0
Entering edit mode

Since you work on a cluster start with 10G. If that fails increase the allocation. Cufflinks should not take as long to run as the alignments.

ADD REPLY

Login before adding your answer.

Traffic: 1141 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6