Question: idba no response
0
gravatar for kelvinfrog75
4.4 years ago by
kelvinfrog7510
kelvinfrog7510 wrote:

I am trying to run idba_ud but found it responded strangely. Here is my command line

$ bin/idba_ud -r read.fa -o output_dir

but it finished almost instantly with this message. There is no assembly files in the output dir.

number of threads 4

Anyone knows what is going on?

assembly • 668 views
ADD COMMENTlink modified 4.4 years ago • written 4.4 years ago by kelvinfrog7510
0
gravatar for Sej Modha
4.4 years ago by
Sej Modha4.7k
Glasgow, UK
Sej Modha4.7k wrote:

There is a typo in this command, there should not be any white spaces between - and o. -r parameter should be specified before input filename in fasta format.

ADD COMMENTlink modified 4.4 years ago • written 4.4 years ago by Sej Modha4.7k

Thanks. They are just the typos when I wrote this question here. I corrected them here. But still it gave the same problem

ADD REPLYlink written 4.4 years ago by kelvinfrog7510

Did you try to specify --mink --max parameters?

ADD REPLYlink written 4.4 years ago by Sej Modha4.7k

I did but still gave the same response

ADD REPLYlink written 4.4 years ago by kelvinfrog7510
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