I am using velvet assembler to assemble the human genome of the cell line 12877. I ran velveth using the command - velveth output 25 Homo_sapiens_assembly18.fasta . Since my .fasta file is huge, I wanted to parallelize the above process.
I have tried the following commands
- make 'OPENMP=1'
- export OMP_NUM_THREADS=8
- export OMP_THREAD_LIMIT=8
- velveth output 25 Homo_sapiens_assembly18.fasta
There seems to be no change in running time, after trying the above commands. Am I missing anything? Could someone help me with this?