Question: query for samtools
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gravatar for viswanathrana29
3.0 years ago by
viswanathrana2920 wrote:

Hi all, I have .vcf file of nelumbo nucifera genome and i have also display the variants with the help of tview commands in samtools for nelumbo nucifera genome. then how can functional annotate the variants which are displayed? any software are available for this, help me for this thank you

snp • 716 views
ADD COMMENTlink modified 3.0 years ago by Pierre Lindenbaum120k • written 3.0 years ago by viswanathrana2920
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gravatar for Pierre Lindenbaum
3.0 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum120k wrote:

there is a gff file available for nelumbo nucifera at : ftp://ftp.ncbi.nih.gov/genomes/Nelumbo_nucifera/GFF/ , then follow Best way to annotate a VCF file with a GFF File

ADD COMMENTlink written 3.0 years ago by Pierre Lindenbaum120k
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