I have a list of GO terms and I would like to create the corresponding network. Even better, I would like to be able to create the entire GO metabolic network and then highlight my terms in that network.
I have two challenges: I am studying Microbiome, which is largely unknown/predicted genes, so I have derived GO terms from blastX homology hits / Blast2GO. So this means (1) I do not have a specific organism to select, (2) I do not have gene names, and (3) I have only GO terms.
Now Cytoscape has many wonderful GO enrichment tools, and I was advised to use these by my colleagues.
But I can't seem to find a method to create a Network from GO terms or import the full GO network.