Question: Network Biology
4
gravatar for Ane
6.6 years ago by
Ane180
Ane180 wrote:

hello,

i want to ask if there are databases with already reconstructed biological networks. Gene-regulatory, protein, metabolic networks.

thanks in advance

network • 1.7k views
ADD COMMENTlink written 6.6 years ago by Ane180
5
gravatar for David Quigley
6.6 years ago by
David Quigley11k
San Francisco
David Quigley11k wrote:

Yes. To get you started, Trey Idekker's lab has generated and collected a number of datasets. You'd probably also want to check out string as a nice example of a general PPI database. I suggest you also google "biological network database" and look at the first few pages of links; there are lots of such databases.

Let the buyer beware, however, when it comes to determining the accuracy of such reconstructions and whether they apply to a given circumstance.

ADD COMMENTlink written 6.6 years ago by David Quigley11k
3
gravatar for B. Arman Aksoy
6.6 years ago by
B. Arman Aksoy1.2k
New York, NY
B. Arman Aksoy1.2k wrote:

Here is a nice and still-maintained list of biological network data sources: http://www.pathguide.org/

ADD COMMENTlink written 6.6 years ago by B. Arman Aksoy1.2k
1
gravatar for Larry_Parnell
6.6 years ago by
Larry_Parnell16k
Boston, MA USA
Larry_Parnell16k wrote:

One of the most often used networks in terms of developmental biology and gene regulation networks is the timing of gene expression events in early Drosophila embryogenesis.

ADD COMMENTlink written 6.6 years ago by Larry_Parnell16k

what is the address?!

ADD REPLYlink written 6.5 years ago by Omid540
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