Question: (Closed) Factors Determing Sequence Depth?
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gravatar for Aqua88
7.4 years ago by
Aqua880
Aqua880 wrote:

Could anyone tell me what are the factors that determine the depth of a sequence?

ADD COMMENTlink modified 7.4 years ago by Istvan Albert ♦♦ 81k • written 7.4 years ago by Aqua880

That doesn't exist, but sequencing depth does, it's the same as coverage. Please use search first.

ADD REPLYlink written 7.4 years ago by Michael Dondrup46k

Before we slam the door on this question: Do you mean "how do I calculate coverage?", or "what biological and technical factors influence depth for a given gene in DNA-seq or RNA-seq?". The first question has been answered several times on the site, but the second question is more interesting and an an active research area.

ADD REPLYlink written 7.4 years ago by David Quigley11k

Even if we can construct something interesting, I don't think that it is our job to guess what OP might have meant.

ADD REPLYlink written 7.4 years ago by Michael Dondrup46k

I had closed this as exact duplicate in Biostar1, listing two questions. A search on the Biostar site yields sufficient results: http://www.biostars.org/search/?q=sequencing+depth No way, we can justify to keep this question open.

ADD REPLYlink written 7.4 years ago by Michael Dondrup46k
0
gravatar for Istvan Albert
7.4 years ago by
Istvan Albert ♦♦ 81k
University Park, USA
Istvan Albert ♦♦ 81k wrote:

Please see: What is sequencing depth

ADD COMMENTlink written 7.4 years ago by Istvan Albert ♦♦ 81k
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