Question: IMPUTE2 data extraction
1
gravatar for tushardave26
3.5 years ago by
tushardave2610
tushardave2610 wrote:

Hello All,

Can someone please recommend any tool that I can use for IMPUTE2 data extraction? So far, I have tried Gtool, but it's very slow. I want to extract data for > 50K SNPs. I have also tried PLINK2 but I am afraid that I will loose IMPUTE2 probability data because PLINK2 convert everything to PLINK format and convert the IMPUTE2 probabilities to genotype call using with the best guess.

Thanks for your help.

data extraction impute2 • 995 views
ADD COMMENTlink written 3.5 years ago by tushardave2610

what is the desired output file?

ADD REPLYlink written 3.5 years ago by Vincent Laufer1.1k
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