Question: Are there any software for the alignment-free bacterial whole genome sequence similarity search and comparison?
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gravatar for hrenchert747
2.9 years ago by
hrenchert74750
hrenchert74750 wrote:

Are there any working software (s) for the alignment-free bacterial whole genome sequence similarity search and comparison? Thx.

ADD COMMENTlink modified 2.9 years ago by kloetzl1.0k • written 2.9 years ago by hrenchert74750
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gravatar for kloetzl
2.9 years ago by
kloetzl1.0k
European Union
kloetzl1.0k wrote:

If all you want is a tree via evolutionary distances, there are plenty of tools available:

  • andi (shameless self-plug ☺)
  • spaced words
  • mash
  • co-phylog
  • kr, alfred, missmax, aff, csc, skrakov-phy, …
ADD COMMENTlink modified 2.9 years ago • written 2.9 years ago by kloetzl1.0k
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