Problem with PGDSpider v 2.1.0.2
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8.0 years ago

Hello!, I am trying to run PGDSpider v 2.1.0.2 on command line on ubuntu 14.04 but PGDSpider can't write the outputfile, INFO message is: initialize convert process... read input file... read input file done. write output file... Unable to write outputfile!

and there's a error message: ch.unibe.iee.cmpg.pgdspider.model.exception.ConvertException: java.lang.NullPointerException at ch.unibe.iee.cmpg.pgdspider.model.writer.ArlequinWriter.write(ArlequinWriter.java:714) at ch.unibe.iee.cmpg.pgdspider.cli.CLIController.convert(CLIController.java:236) at ch.unibe.iee.cmpg.pgdspider.PGDSpiderCli.main(PGDSpiderCli.java:31) Caused by: java.lang.NullPointerException at ch.unibe.iee.cmpg.pgdspider.model.writer.ArlequinWriter.write(ArlequinWriter.java:290) ... 2 more

options that I am using are: java -Xmx1024m -Xms512M -jar PGDSpider2-cli.jar PGDSpiderCli -inputifle pathtomyinputfile.nex -inputformat NEXUS -outputfile myoutputfile.arp -outputformat ARLEQUIN -spid pathtomyspidfile.

After execute, the program creates the outputfile but empty :(. So any help are very useful for me. Thanks to read this post.

alignment • 3.5k views
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I have this same problem with version 2.1.1.5. Did you ever find a solution?

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