Question: unigene assembly for snp calling
gravatar for lakhujanivijay
4.0 years ago by
lakhujanivijay5.1k wrote:

I have a generic quetion regarding SNP calling for RNA seq data. Generally, the reference genome should be considered for SNP calling but what if it is not available? In that case, can one use:

  1. the reference transcriptome?

  2. if reference transcriptome is also unavailable, can one use the unigenes compiles in a multifasta as reference for SNP calling?

unigene snp calling assembly • 963 views
ADD COMMENTlink written 4.0 years ago by lakhujanivijay5.1k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1663 users visited in the last hour