Question: How can I specify my proteins gene to orthoMCL
0
gravatar for Esaie
3.9 years ago by
Esaie130
Canada
Esaie130 wrote:

I'm using orthoMCL, all work fine. But i dont know how to specify to orthoMCL which proteins belong to which genes and to which species. I have searched over Internet i have not seen anything Tank you.

transcript orthomcl protein • 1.2k views
ADD COMMENTlink modified 3.9 years ago by natasha.sernova3.7k • written 3.9 years ago by Esaie130
1
gravatar for natasha.sernova
3.9 years ago by
natasha.sernova3.7k
natasha.sernova3.7k wrote:

See this paper: Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3196566/

“How the tool processes your proteins: This protocol maps your proteins to groups in OrthoMCL-DB. To understand how OrthoMCL-DB is created, please see the OrthoMCL- DB Methods page.”

OrthoMCL Algorithm:

https://docs.google.com/document/d/1RB-SqCjBmcpNq-YbOYdFxotHGuU7RK_wqxqDAMjyP_w/pub

ADD COMMENTlink modified 3.9 years ago • written 3.9 years ago by natasha.sernova3.7k
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