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Question: How can I specify my proteins gene to orthoMCL
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gravatar for Esaie
4.6 years ago by
Esaie • 140
Canada
Esaie • 140 wrote:

I'm using orthoMCL, all work fine. But i dont know how to specify to orthoMCL which proteins belong to which genes and to which species. I have searched over Internet i have not seen anything Tank you.
transcript orthomcl protein • 1.4k views
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modified 4.5 years ago by natasha.sernova • 3.8k • written 4.6 years ago by Esaie • 140

Did you find the answer to this? I am also search for how to format the gene --> mapping and feed it into the program.

ADD REPLY • link written 7 months ago by pooja.singh09 • 0
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gravatar for natasha.sernova
4.5 years ago by
natasha.sernova • 3.8k
natasha.sernova • 3.8k wrote:

See this paper: Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3196566/

“How the tool processes your proteins: This protocol maps your proteins to groups in OrthoMCL-DB. To understand how OrthoMCL-DB is created, please see the OrthoMCL- DB Methods page.”

OrthoMCL Algorithm:

https://docs.google.com/document/d/1RB-SqCjBmcpNq-YbOYdFxotHGuU7RK_wqxqDAMjyP_w/pub
ADD COMMENT • link modified 4.5 years ago • written 4.5 years ago by natasha.sernova • 3.8k
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