representation of chip enrichment in two genomes

Question

[kanwarjag]

I want to show enrichment regions in two genomes in same screen shot. The idea is to show that enrichment occur in same genes (selected) for human and mouse genomes. I have bead peak files. What should be best way; IGV will take one genome.

Answer 1

[SP]

You can plot a line plot with the tag densities of region. Centre of the plot could be the middle of the peak or TSS of gene. An example could be like in image, Red line represent enrichment on Human and purple could be for Mouse.