Question: representation of chip enrichment in two genomes
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gravatar for kanwarjag
3.8 years ago by
kanwarjag1.0k
United States
kanwarjag1.0k wrote:

I want to show enrichment regions in two genomes in same screen shot. The idea is to show that enrichment occur in same genes (selected) for human and mouse genomes. I have bead peak files. What should be best way; IGV will take one genome.

chip-seq • 759 views
ADD COMMENTlink modified 3.8 years ago by SP250 • written 3.8 years ago by kanwarjag1.0k
0
gravatar for SP
3.8 years ago by
SP250
Germany
SP250 wrote:

You can plot a line plot with the tag densities of region. Centre of the plot could be the middle of the peak or TSS of gene. An example could be like in image, Red line represent enrichment on Human and purple could be for Mouse.

enter image description here

ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by SP250
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