please tell How to start analysis on pdb file for finding similar patterns or inheritance.
please tell How to start analysis on pdb file for finding similar patterns or inheritance.
I’ve learned that similar sequences have similar structures.
That is not true sometimes. See this paper:
http://www.ncbi.nlm.nih.gov/pubmed/18004789
Another paper mentions a number of different tools:
http://www.ncbi.nlm.nih.gov/pubmed/27307633
In particular, the authors look at different levels of protein structure flexibility.
There are a lot of structure comparison tools:
http://molbiol-tools.ca/Protein_tertiary_structure.htm
https://toolkit.tuebingen.mpg.de/sections/tertstruct
https://www.expasy.org/proteomics/protein_structure
http://www.geneinfinity.org/sp/sp_structcompare.html
http://www.rcsb.org/pdb/workbench/workbench.do
http://bip.weizmann.ac.il/toolbox/structure/tertiary.htm
And there are much more. I think you need to look at them, they may be helpful.
See this post if you need some special structures:
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Is this a homework question?
No its not. I require it for my research work.