Question: PDB Naming Conventions
0
gravatar for rmoore8869
3.0 years ago by
rmoore88690
rmoore88690 wrote:

I'm using the RCSB's Rest API to gather some bond data information for metalloenzymes. I wanted to know whether the differing naming conventions for PDB IDs(some are letter-number-letter-number, while some are 3 numbers - 1 letter) signify anything, as in do they contain more/less information or are an older version(different format)?

biopython 3dmol.js rcsb pdb • 1.0k views
ADD COMMENTlink modified 3.0 years ago by Eric T.2.5k • written 3.0 years ago by rmoore88690

Help on PDB ID's is here.

ADD REPLYlink written 3.0 years ago by genomax69k
2
gravatar for Eric T.
3.0 years ago by
Eric T.2.5k
San Francisco, CA
Eric T.2.5k wrote:

They tend to be sequential for structures published together as part of the same study or project. They're automatically assigned now and contain no meaningful information by themselves other than that. Older structures appear to have been named with a bit more human input, e.g. the first near-complete structure of the ATP-binding domain of a protein kinase is 1ATP.

ADD COMMENTlink written 3.0 years ago by Eric T.2.5k
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