Question: seed sequences of human miRNA
1
gravatar for ankitplusplus
4.6 years ago by
ankitplusplus30 wrote:

Hi,

Can anybody help me to find out the list of seed sequences of human miRNA. Is there any tool, database or article where i can get all the seed list. Thanks.

mirna • 3.6k views
ADD COMMENTlink modified 4.6 years ago by ashraf.bioinfo10 • written 4.6 years ago by ankitplusplus30
1

Hey genomax2 many many thanks for your answer

Can you plz send a screenshot for TargetScan entries like:

Select a species : Human

AND

  1. Enter a human gene symbol (e.g. "Hmga2") [?????????] or an Ensembl gene (ENSG00000149948) or transcript (ENST00000403681) ID

AND/OR

  1. Do one of the following:

Select a broadly conserved* microRNA family ???

Select a conserved* microRNA family ???

Select a poorly conserved but confidently annotated microRNA family ???

Select another miRBase annotation ??? Note that most of these families are star miRNAs or RNA fragments misannotated as miRNAs.

Enter a microRNA name (e.g. "miR-9-5p") ????

It would be really grateful.. if you can reply me back Thanks

ADD REPLYlink written 4.6 years ago by ashraf.bioinfo10
1

You need to do some work yourself. We are not going to do your homework.

BTW: Don't post the same question using different accounts. Your accounts may be suspended/moderated.

ADD REPLYlink modified 4.6 years ago • written 4.6 years ago by GenoMax96k
2
gravatar for GenoMax
4.6 years ago by
GenoMax96k
United States
GenoMax96k wrote:

This file from the TargetScan website appears to have miRNA seed sequences for many species.

ADD COMMENTlink modified 4.6 years ago • written 4.6 years ago by GenoMax96k
1

Thanks a lot for your answer.

ADD REPLYlink written 4.6 years ago by ankitplusplus30
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