Question: Script/Application to create a genbank format sub-sequence
0
gravatar for jrj.healey
2.5 years ago by
jrj.healey10k
United Kingdom
jrj.healey10k wrote:

I previously asked this question here:

Creating a 'subsetted' genbank of an operon from a whole genome

And accepted an answer using CLC which did work for the couple that I was doing at the time.

I'm now wondering if anyone has a commandline script/app/pipeline that would work for this as I need to do a fair few more, and doing them by hand will be a less than pleasant experience.

I need to do this because I need all the locus tags/gene IDs to be preserved - but not really sure how to go about it?

genome • 794 views
ADD COMMENTlink modified 2.0 years ago • written 2.5 years ago by jrj.healey10k
1
gravatar for jrj.healey
2.0 years ago by
jrj.healey10k
United Kingdom
jrj.healey10k wrote:

Wrote my own in the end! Fairly novice biopython-er so suggestions/feedback welcomed.

Here: https://github.com/jrjhealey/bioinfo-tools/blob/master/Genbank_slicer.py

ADD COMMENTlink written 2.0 years ago by jrj.healey10k
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