Question: Script/Application to create a genbank format sub-sequence
0
gravatar for jrj.healey
2.7 years ago by
jrj.healey11k
United Kingdom
jrj.healey11k wrote:

I previously asked this question here:

Creating a 'subsetted' genbank of an operon from a whole genome

And accepted an answer using CLC which did work for the couple that I was doing at the time.

I'm now wondering if anyone has a commandline script/app/pipeline that would work for this as I need to do a fair few more, and doing them by hand will be a less than pleasant experience.

I need to do this because I need all the locus tags/gene IDs to be preserved - but not really sure how to go about it?

genome • 835 views
ADD COMMENTlink modified 2.2 years ago • written 2.7 years ago by jrj.healey11k
1
gravatar for jrj.healey
2.2 years ago by
jrj.healey11k
United Kingdom
jrj.healey11k wrote:

Wrote my own in the end! Fairly novice biopython-er so suggestions/feedback welcomed.

Here: https://github.com/jrjhealey/bioinfo-tools/blob/master/Genbank_slicer.py

ADD COMMENTlink written 2.2 years ago by jrj.healey11k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1703 users visited in the last hour