How to cluster sequences present in multiple fasta files

Question

[namz]

Hi,

I have this situation, where i want to compare sequences present in multiple fasta files, and here one fasta file is one organism and i want to see co-relation between these organisms in terms of dendogram or clustering or anything.

So i want to compare sequences present in one file with another and see the relation between files, so is there any tool or method by which i can compare these files.

Thank You

Answer 1

[Sej Modha]

You can use cd-hit with 1.0 identity and redundancy 1 (-t parameter) to cluster sequences in multi fasta file.