Question: How to cluster sequences present in multiple fasta files
0
gravatar for namz
2.6 years ago by
namz0
namz0 wrote:

Hi,

I have this situation, where i want to compare sequences present in multiple fasta files, and here one fasta file is one organism and i want to see co-relation between these organisms in terms of dendogram or clustering or anything.

So i want to compare sequences present in one file with another and see the relation between files, so is there any tool or method by which i can compare these files.

Thank You

blast alignment ngs • 1.1k views
ADD COMMENTlink modified 2.6 years ago by Sej Modha4.1k • written 2.6 years ago by namz0
1
gravatar for Sej Modha
2.6 years ago by
Sej Modha4.1k
Glasgow, UK
Sej Modha4.1k wrote:

You can use cd-hit with 1.0 identity and redundancy 1 (-t parameter) to cluster sequences in multi fasta file.

ADD COMMENTlink written 2.6 years ago by Sej Modha4.1k
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