How to calculate dN/dS values?
1
0
Entering edit mode
4.9 years ago
utkarsh.sood ▴ 40

Hello,

I have made a codon alignment using pal2nal and generated a .codon file. Now I want to calculate the dN/dS values using paml. How can I generate tree file (.tree) and (.cnt) to be used by codeml in paml? If I am doing something wrong please guide me for the correct method to calculate dN/dS values.

Thanks in advance!

genome dN/dS PAML pal2nal • 4.3k views
ADD COMMENT
0
Entering edit mode
4.9 years ago
Sej Modha 4.9k

You might find this blog useful.

ADD COMMENT

Login before adding your answer.

Traffic: 2177 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6