Question: How to calculate dN/dS values?
0
gravatar for utkarsh.sood
2.3 years ago by
utkarsh.sood30
India
utkarsh.sood30 wrote:

Hello,

I have made a codon alignment using pal2nal and generated a .codon file. Now I want to calculate the dN/dS values using paml. How can I generate tree file (.tree) and (.cnt) to be used by codeml in paml? If I am doing something wrong please guide me for the correct method to calculate dN/dS values.

Thanks in advance!

pal2nal paml dn/ds genome • 1.9k views
ADD COMMENTlink modified 2.3 years ago by Sej Modha3.8k • written 2.3 years ago by utkarsh.sood30
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gravatar for Sej Modha
2.3 years ago by
Sej Modha3.8k
Glasgow, UK
Sej Modha3.8k wrote:

You might find this blog useful.

ADD COMMENTlink written 2.3 years ago by Sej Modha3.8k
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