Question: compare two vcf files which generate using bcftools
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gravatar for rastogi.suraj93
3.8 years ago by
rastogi.suraj9330 wrote:

hello every one, i am trying to compare two vcf files generate by using bcf tools and i am use this command for compare and find comman snp position between in these two files-

vcf-isec -n +2 input_1.vcf input_2.vcf | bgzip -c > output.vcf.gz

but i am getting error .. i would like to appreciate if any one please suggest me best command which i use for comparing of both files. thanking you all

snp analysis alignment samtools vcf • 1.6k views
ADD COMMENTlink written 3.8 years ago by rastogi.suraj9330

but i am getting error

https://commons.wikimedia.org/wiki/Category:Crystal_balls#/media/File:Paulinefrederick_5_retouched.jpg

which one ?

ADD REPLYlink modified 3.8 years ago • written 3.8 years ago by Pierre Lindenbaum128k
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