best method for Making Pan-genome

Question

[sai]

what is the best method (tool) for making pangenome for bacteria? what are the applications of the pangenomes

[WouterDeCoster]

Please use the appropriate post type. Use question for questions and 'Tool' only when announcing (new) software.

Answer 1

[igor]

• https://sanger-pathogens.github.io/Roary/
• https://lfz.corefacility.ca/panseq/
• http://www.iicb.res.in/bpga/index.html
• https://sourceforge.net/projects/panoct/