Entering edit mode
7.8 years ago
JackyBurton
•
0
I have been trying to recompile minia to run on a larger kmer length with the following command from the manual
`make clean && make k=100
but I receive the error
make: *** No rule to make target 'clean'. Stop.
typing make produces the error:
make: *** No targets specified and no makefile found. Stop.
So it appears minia does not have a makefile? I've tried reinstalling it and that does not solve the issue. Is there a way other than 'make' to recompile for a larger kmer? Or is there some other solution or mistake I am making?
thank you, any and all help appreciated.
Are you using these commands in the source code folder for Minia?
If you are using Minia on a shared machine/server then you would not be able to do this for the application installed for common use. You would need to compile your own copy with larger kmer from source.
which version of minia? the updated manual for version 2 on the website (http://minia.genouest.org/files/minia.pdf) has a different build method:
mkdir build && cd build && cmake -Dk4=160 .. && make -j 4