Question: How can I get the gene annotation file from Illumina (RNA Sequencing) ?
0
gravatar for debitboro
3.3 years ago by
debitboro140
Belgium
debitboro140 wrote:

Hi all,

I'm performing some network analysis using WGCNA package for RNASeq data. I need the gene annotation file from Illumina for RNASeq. Somebody have an idea about how to get it ?

ADD COMMENTlink modified 3.3 years ago by Carlo Yague4.8k • written 3.3 years ago by debitboro140

Gene annotation needs to match the reference you used for alignments. Get the annotation from the same source as your reference for consistency (e.g. Gencode, Ensembl, UCSC etc). What genome are you working with?

ADD REPLYlink modified 3.3 years ago • written 3.3 years ago by genomax75k
0
gravatar for Carlo Yague
3.3 years ago by
Carlo Yague4.8k
Canada
Carlo Yague4.8k wrote:

Are you talking about illumina iGenome ?

ADD COMMENTlink written 3.3 years ago by Carlo Yague4.8k
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