Question: How can I get the gene annotation file from Illumina (RNA Sequencing) ?
0
debitboro • 140 wrote:
Hi all,
I'm performing some network analysis using WGCNA package for RNASeq data. I need the gene annotation file from Illumina for RNASeq. Somebody have an idea about how to get it ?
ADD COMMENT
• link
•
modified 3.3 years ago
by
Carlo Yague • 4.8k
•
written
3.3 years ago by
debitboro • 140
Gene annotation needs to match the reference you used for alignments. Get the annotation from the same source as your reference for consistency (e.g. Gencode, Ensembl, UCSC etc). What genome are you working with?