Question: Roadmap WGBS methylation data download
0
gravatar for Shicheng Guo
3.0 years ago by
Shicheng Guo7.7k
Shicheng Guo7.7k wrote:

Hi All,

Is there any easy way to download all the WGBS data (Bam or Wig) of Roadmap project?

I'd like to have a FTP or Wget weblinks.

Thanks.

roadmap rrbs wgbs epigenome • 944 views
ADD COMMENTlink modified 2.6 years ago by tim.triche10 • written 3.0 years ago by Shicheng Guo7.7k
1
gravatar for tim.triche
2.6 years ago by
tim.triche10
tim.triche10 wrote:

WIGs and SRA: https://www.ncbi.nlm.nih.gov/geo/roadmap/epigenomics/?search=bisulfite&display=181

FASTQs (example for CD14+ WGBS from the Broad within the REMC project): http://www.ebi.ac.uk/ena/data/view/SRR1104848

Plan on plugging in the SRR/SRX numbers for the ENA template individually, but it's still faster than using slowq-dump.

ADD COMMENTlink written 2.6 years ago by tim.triche10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1663 users visited in the last hour