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Question: Roadmap WGBS methylation data download
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gravatar for Shicheng Guo
3.9 years ago by
Shicheng Guo • 8.3k
Shicheng Guo • 8.3k wrote:

Hi All,

Is there any easy way to download all the WGBS data (Bam or Wig) of Roadmap project?

I'd like to have a FTP or Wget weblinks.

Thanks.
roadmap rrbs wgbs epigenome • 1.2k views
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modified 3.5 years ago by tim.triche • 10 • written 3.9 years ago by Shicheng Guo • 8.3k
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gravatar for tim.triche
3.5 years ago by
tim.triche • 10
tim.triche • 10 wrote:

WIGs and SRA: https://www.ncbi.nlm.nih.gov/geo/roadmap/epigenomics/?search=bisulfite&display=181

FASTQs (example for CD14+ WGBS from the Broad within the REMC project): http://www.ebi.ac.uk/ena/data/view/SRR1104848

Plan on plugging in the SRR/SRX numbers for the ENA template individually, but it's still faster than using slowq-dump.
ADD COMMENT • link written 3.5 years ago by tim.triche • 10
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