Question: How can I compare the output of two RNASeq tools?
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gravatar for mirza
3.9 years ago by
mirza110
India
mirza110 wrote:

Hi, I did using RNA Seq/ DEG analysis using 2 different tools and here is the summary of the results Tool1 Tool2 Total Genes 2960 20877 Up (8.3 to 0.185 ) 1584 8257 Down (-10.33 to -0.35) 1376 12620 Upregulated DEGs (log2fc>2.0) 794 1265 Downregulated DEGs (log2fc<-2.0) 844 1067

This might sound real lame but how to compare the results of these 2 in percent in context of log2fc of up and down regulated? This result is in front of me but maybe my mind is not working. I want to say that the results in context of up and down DEGs is comparable.

compare output • 763 views
ADD COMMENTlink modified 6 months ago by slyls7300 • written 3.9 years ago by mirza110
0
gravatar for udi.landau
3.9 years ago by
udi.landau20
udi.landau20 wrote:

Maybe a Venn diagram? (2 actually, one for up and one for down)

ADD COMMENTlink written 3.9 years ago by udi.landau20

@udi.landau yes, exactly, dats how I did it. Thank you.

ADD REPLYlink written 3.9 years ago by mirza110
0
gravatar for slyls730
6 months ago by
slyls7300
slyls7300 wrote:

you can use this online tool DiVenn which will generate a nice graph https://divenn.noble.org

ADD COMMENTlink written 6 months ago by slyls7300

Please consider making a Tool post to advertise your tool instead of refreshing multiple years-old threads. Thank you.

ADD REPLYlink written 6 months ago by ATpoint36k
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