Tool:NCBI SRA Tools: "Extract reads in SAM or BAM format from NCBI SRA" is broken
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5.4 years ago

When trying to run the tool with a valid SRA aiignment ID, the following error occurs:

Galaxy Tool ID: toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sam_dump/1.3.0 Galaxy Tool Version: 1.3.0 Tool Version: /galaxy-repl/main/jobdir/013/715/13715160/tool_script.sh: line 9: sam-dump: command not found

Screenshot of error

bug sam-dump sratoolkit Tool • 1.7k views
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