Tool: NCBI SRA Tools: "Extract reads in SAM or BAM format from NCBI SRA" is broken
0
gravatar for Open Genomes
3.1 years ago by
Open Genomes Foundation
Open Genomes0 wrote:

When trying to run the tool with a valid SRA aiignment ID, the following error occurs:

Galaxy Tool ID: toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/sam_dump/1.3.0 Galaxy Tool Version: 1.3.0 Tool Version: /galaxy-repl/main/jobdir/013/715/13715160/tool_script.sh: line 9: sam-dump: command not found

Screenshot of error

tool bug sam-dump sratoolkit • 1.2k views
ADD COMMENTlink written 3.1 years ago by Open Genomes0
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