How to download TCGA histopathology data for all TCGA samples

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7.7 years ago

sunilpachakar ▴ 10

Dear All,

I want to download TCGA histopathology data for all samples in TCGA, I already tried cBioportal dataset downloading option but it gave me 146 files for different types of cancer. Is there any cancer database which will give me a single file which contains histopathlogy data of all TCGA samples?

Thanks

next-gen gene • 2.8k views

ADD COMMENT • link updated 7.7 years ago by natasha.sernova ★ 4.0k • written 7.7 years ago by sunilpachakar ▴ 10

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There are many existing links together, but it is not a single file.

https://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/tcgaBiolinks.html

Three years ago there was this post, but again - no single file.

Retreiving Data From Tcga Database

Two years ago there was a post for a specific sample:

How to download a specific sample from TCGA ?

ADD REPLY • link 7.7 years ago by natasha.sernova ★ 4.0k

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Thanks for your TCGAbiolinks suggestion.

ADD REPLY • link 7.7 years ago by sunilpachakar ▴ 10

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